Revealed | JFK Files expose decades of covert CIA operations in South Africa

Report reveals that the US Mission in South Africa has, over the years, created a network of sources that have been successful in spying and acquiring information for US intelligence.

Report reveals that the US Mission in South Africa has, over the years, created a network of sources that have been successful in spying and acquiring information for US intelligence.

Published Mar 20, 2025

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The assassination of President John F. Kennedy in 1963 remains one of the most scrutinised events in American history, sparking countless theories and investigations. 

However, the release of over 2,000 JFK files on Tuesday authorised by President Donald Trump shed light on various aspects of US intelligence operations, including those in Southern Africa, particularly in cities like Pretoria and Johannesburg.

This highlights the implications of these files for Central Intelligence Agency (CIA) activities and the broader intelligence landscape in South Africa, linking them to the Independent Media case and the US embassy's role alongside the State Security Agency (SSA).

The CIA's Presence in South Africa

During the Cold War, the CIA was heavily involved in various operations across Africa, including South Africa. 

Pretoria and Johannesburg served as significant bases for US intelligence activities. 

The geopolitical landscape of the time, marked by anti-colonial movements and the struggle against apartheid, made South Africa a focal point for US interests in curtailing Soviet influence in the region.

The JFK files reveal glimpses of CIA operations that aimed to gather intelligence on domestic and regional political movements. 

It also indicates that the CIA maintained surveillance on anti-apartheid activists and monitored the activities of the African National Congress (ANC) and other groups, as revealed in a leaked report published in 2022 by Independent Media after a fierce court battle.

This intelligence gathering was often justified under the pretext of national security and the fight against communism.

The Independent Media case, the role of the US Embassy and the SSA

In December 2022, the publication was handed a purported intelligence report of the SSA classified as “Highly Confidential" entitled: “US INTEREST IN ANC PARTY DYNAMICS".

This report contains intelligence that the US had infiltrated the ANC and its leadership to such an extent that it could influence or subvert national policy.

Those implicated in the report, including officials from the SSA, the US embassy, the ANC, and the presidency, were asked to comment. 

The US denied involvement in the report, but the SSA was concerned about how the report was leaked.

Within 48 hours, the High Court had ruled ex parte that the publication was in unlawful possession of the report and that its publication would harm state security. 

The publication was interdicted from publishing the report.

After almost three years, the Supreme Court of Appeals ruled that the classification of the intelligence report was against the public interest and lacked sufficient grounds for such secrecy, a tremendous victory for the rights of the free press in South Africa.

The SSA had argued that the report’s classification prevented its contents from becoming public knowledge due to the threats posed to state security and public safety and that the publication had obtained the report unlawfully.

But the SCA was scathing in addressing the State Security Agency’s case against the report's publication, saying: “The onus to establish that the report should not be in the public domain because of national security rested on the Minister.

"This seems to have eluded the High Court. It approached the matter on the footing that the ‘classification (of the report as “secret”) stands until set aside."

The US embassy in Pretoria has historically been a central hub for American diplomatic and intelligence activities in South Africa.

Its role extends beyond mere diplomacy; it acts as a conduit for intelligence sharing between the US and its allies, the information was also contained in the SSA secret report.

In court documents against Independent Media, the SSA admitted that the US embassy has often collaborated with the SSA, the South African government's primary intelligence agency.

However, this collaboration has sometimes raised concerns regarding sovereignty and the ethical implications of foreign intelligence operations on domestic soil.

While primarily focused on US domestic politics, the JFK files also provide context for understanding the broader implications of American intelligence strategies in places like South Africa. 

The intertwining of US foreign policy with local intelligence operations can lead to scenarios where media freedom is compromised under the guise of national security.

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